Doodle HOWTO

Leonardo Mariño-Ramírez

marino@tofu.tamu.edu

Revision History
Revision 0.01	2002-05-08	Revised by: marino
Changed date format (2002-05-08)

This document describes how to setup a doodle database and how to upload clones and features to the database

Table of Contents

1. Introduction

1.1. Copyright Information
1.2. Disclaimer
1.3. New Versions
1.4. Credits
1.5. Feedback

2. Doodle database structure

2.1. Logical structure
2.2. Creating a new database in MySQL and importing schema
2.3. Make a BLAST database for the organism
2.4. Populate the gi2genename table
2.5. Populate the tables for gbrowse
2.6. Populate the other genomic tables

3. Doodle pipeline

3.1. Information flow
3.2. Rename clones
3.3. Upload the fasta file to the database
3.4. BLAST the sequences in the blast directory and parse them

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